If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ), 'gf_id' => 'HOM05D000858', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000858' ), 'data_identifier' => 'HOM05D000858', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000858', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '696', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p22190' => 'bna', 'A04p26480' => 'bna', 'A05p11120' => 'bna', 'A05p21250' => 'bna', 'A07p10090' => 'bna', 'A07p43690' => 'bna', 'A07p43700' => 'bna', 'A08p24750' => 'bna', 'A08p37690' => 'bna', 'A09p36480' => 'bna', 'A10p01180' => 'bna', 'Aa31LG10G5800' => 'aar', 'Aa31LG10G6850' => 'aar', 'Aa31LG1G10030' => 'aar', 'Aa31LG4G2520' => 'aar', 'Aa31LG6G5630' => 'aar', 'Actinidia01714' => 'ach', 'Actinidia02510' => 'ach', 'Actinidia04588' => 'ach', 'Actinidia07694' => 'ach', 'Actinidia12843' => 'ach', 'Actinidia14246' => 'ach', 'Actinidia16712' => 'ach', 'Actinidia18479' => 'ach', 'Actinidia18847' => 'ach', 'Actinidia20971' => 'ach', 'Actinidia25866' => 'ach', 'Actinidia31574' => 'ach', 'Actinidia35173' => 'ach', 'Actinidia39572' => 'ach', 'Ah.11g049150' => 'amhyb', 'Ah.14g086440' => 'amhyb', 'AL1G11750' => 'aly', 'AL1G43920' => 'aly', 'AL1G54500' => 'aly', 'AL2G38810' => 'aly', 'AL3G30220' => 'aly', 'AL4G30520' => 'aly', 'Aqoxy1G01701' => 'aox', 'Aqoxy2G02634' => 'aox', 'Aqoxy5G02716' => 'aox', 'Aqoxy7G03972' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0797TP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SCL5Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3B8AB8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.49U4CP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.909YBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLXM2V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DP7WE9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FH4MAJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HW7D1Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IQI2TJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IXQG45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LI5S49' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MX5WXF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZV35V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QH4I6C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V5BWWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VIJ10A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1BTJA' => 'arhy', 'AT1G02400' => 'ath', 'AT1G30040' => 'ath', 'AT1G47990' => 'ath', 'AT1G78440' => 'ath', 'AT2G34555' => 'ath', 'ATR0693G035' => 'atr', 'ATR0693G240' => 'atr', 'ATR0743G169' => 'atr', 'ATR1091G041' => 'atr', 'Atru.chr10.1226' => 'acertr', 'Atru.chr4.3110' => 'acertr', 'Atru.chr5.939' => 'acertr', 'AUR62002752' => 'cqu', 'AUR62011753' => 'cqu', 'AUR62024597' => 'cqu', 'AUR62030199' => 'cqu', 'BcaB01g03718' => 'bca', 'BcaB01g06134' => 'bca', 'BcaB01g06366' => 'bca', 'BcaB02g09531' => 'bca', 'BcaB02g11356' => 'bca', 'BcaB03g12190' => 'bca', 'BcaB03g13514' => 'bca', 'BcaB03g13846' => 'bca', 'BcaB03g15783' => 'bca', 'BcaB03g16018' => 'bca', 'BcaB05g25140' => 'bca', 'BcaB06g28782' => 'bca', 'BcaB07g32604' => 'bca', 'BcaC01g00150' => 'bca', 'BcaC01g00151' => 'bca', 'BcaC01g05561' => 'bca', 'BcaC02g11517' => 'bca', 'BcaC02g12463' => 'bca', 'BcaC03g15813' => 'bca', 'BcaC05g24623' => 'bca', 'BcaC05g27020' => 'bca', 'BcaC05g27599' => 'bca', 'BcaC06g35483' => 'bca', 'BcaC08g47417' => 'bca', 'BolC2t09575H' => 'bol', 'BolC3t14620H' => 'bol', 'BolC3t14883H' => 'bol', 'BolC3t14885H' => 'bol', 'BolC3t19890H' => 'bol', 'BolC4t21968H' => 'bol', 'BolC4t23031H' => 'bol', 'BolC4t27855H' => 'bol', 'BolC5t28903H' => 'bol', 'BolC5t31602H' => 'bol', 'BolC5t32302H' => 'bol', 'BolC6t40257H' => 'bol', 'BolC7t42044H' => 'bol', 'BraA02t07224Z' => 'bra', 'BraA04t18151Z' => 'bra', 'BraA05t20059Z' => 'bra', 'BraA05t21033Z' => 'bra', 'BraA07t28802Z' => 'bra', 'BraA07t31881Z' => 'bra', 'BraA07t31882Z' => 'bra', 'BraA08t34429Z' => 'bra', 'BraA08t35665Z' => 'bra', 'BraA09t39170Z' => 'bra', 'BraA10t42396Z' => 'bra', 'C02p35600' => 'bna', 'C03p24920' => 'bna', 'C03p24930' => 'bna', 'C03p76330' => 'bna', 'C04p03300' => 'bna', 'C04p14480' => 'bna', 'C04p63890' => 'bna', 'C05p01200' => 'bna', 'C05p28840' => 'bna', 'C05p35850' => 'bna', 'C06p52370' => 'bna', 'C07p15570' => 'bna', 'CAN.G1003.2' => 'can', 'CAN.G1003.3' => 'can', 'CAN.G176.5' => 'can', 'CAN.G293.3' => 'can', 'CAN.G305.54' => 'can', 'CAN.G375.92' => 'can', 'CAN.G660.26' => 'can', 'CAN.G904.22' => 'can', 'CANSAT25G0881' => 'cansat', 'CANSAT35G1911' => 'cansat', 'CANSAT56G3872' => 'cansat', 'CANSAT78G2234' => 'cansat', 'CARHR001720' => 'chi', 'CARHR029360' => 'chi', 'CARHR037620' => 'chi', 'CARHR071960' => 'chi', 'CARHR128640' => 'chi', 'Carub.0001s0147' => 'cru', 'Carub.0001s2827' => 'cru', 'Carub.0001s3709' => 'cru', 'Carub.0002s2534' => 'cru', 'Carub.0003s1695' => 'cru', 'Carub.0004s1622' => 'cru', 'Ca_00541_v3' => 'car', 'Ca_00949_v3' => 'car', 'Ca_00950_v3' => 'car', 'Ca_03394_v3' => 'car', 'Ca_10264_v3' => 'car', 'Ca_18263_v3' => 'car', 'Ca_21403_v3' => 'car', 'Ca_21418_v3' => 'car', 'Ca_29681_v3' => 'car', 'Cc00_g09870' => 'ccan', 'Cc00_g21190' => 'ccan', 'Cc00_g30400' => 'ccan', 'Cc01_g21980' => 'ccan', 'Cc05_g10350' => 'ccan', 'CDE02G1186' => 'cde', 'CDE09G0701' => 'cde', 'Cfa000941' => 'cfa', 'Cfa004849' => 'cfa', 'Cfa005748' => 'cfa', 'Cfa015684' => 'cfa', 'Cfa015685' => 'cfa', 'Cfa019456' => 'cfa', 'Ciclev10005385m.g' => 'ccl', 'Ciclev10015817m.g' => 'ccl', 'Ciclev10021090m.g' => 'ccl', 'Ciclev10024433m.g' => 'ccl', 'CiPaw.01G133800' => 'cil', 'CiPaw.02G072300' => 'cil', 'CiPaw.07G120700' => 'cil', 'CiPaw.08G086600' => 'cil', 'CiPaw.09G123300' => 'cil', 'CiPaw.10G091900' => 'cil', 'CiPaw.11G068800' => 'cil', 'CiPaw.12G045600' => 'cil', 'ClCG01G024630' => 'cla', 'ClCG03G006860' => 'cla', 'ClCG07G010460' => 'cla', 'ClCG09G004870' => 'cla', 'ClCG10G011630' => 'cla', 'COL.COLO4_03436' => 'col', 'COL.COLO4_17419' => 'col', 'COL.COLO4_31071' => 'col', 'COL.COLO4_34563' => 'col', 'Cpa.g.sc166.2' => 'cpa', 'Cpa.g.sc18.101' => 'cpa', 'Cpa.g.sc77.94' => 'cpa', 'Cpa.g.sc9.2' => 'cpa', 'CsaV3_1G032430' => 'csa', 'CsaV3_3G026530' => 'csa', 'CsaV3_4G007790' => 'csa', 'CsaV3_7G030210' => 'csa', 'CSS0000335' => 'camsi', 'CSS0001566' => 'camsi', 'CSS0002801' => 'camsi', 'CSS0002805' => 'camsi', 'CSS0009544' => 'camsi', 'CSS0010875' => 'camsi', 'CSS0018120' => 'camsi', 'CSS0018726' => 'camsi', 'CSS0021896' => 'camsi', 'CSS0029172' => 'camsi', 'CSS0030708' => 'camsi', 'CSS0036893' => 'camsi', 'CSS0046277' => 'camsi', 'CSS0049304' => 'camsi', 'DCAR_002522' => 'dca', 'DCAR_002909' => 'dca', 'DCAR_002911' => 'dca', 'DCAR_012323' => 'dca', 'DCAR_012324' => 'dca', 'DCAR_013795' => 'dca', 'DCAR_017567' => 'dca', 'DCAR_018261' => 'dca', 'DCAR_021050' => 'dca', 'DCAR_026974' => 'dca', 'DCAR_027911' => 'dca', 'DCAR_027912' => 'dca', 'Dinv03425' => 'din', 'Dinv12113' => 'din', 'Dinv13315' => 'din', 'Dinv15131' => 'din', 'Dinv26670' => 'din', 'Dinv30747' => 'din', 'Dinv32257' => 'din', 'Dinv33145' => 'din', 'Dinv41731' => 'din', 'Dinv44251' => 'din', 'Duzib133G0684' => 'dzi', 'Duzib151G0830' => 'dzi', 'Duzib160G0213' => 'dzi', 'Duzib187G1422' => 'dzi', 'Duzib192G0519' => 'dzi', 'Duzib212G0097' => 'dzi', 'Duzib213G0452' => 'dzi', 'Duzib235G0352' => 'dzi', 'Duzib268G0318' => 'dzi', 'ECA233G5662' => 'eca', 'ECA234G2719' => 'eca', 'ECA236G0459' => 'eca', 'ECA240G2360' => 'eca', 'ECA247G1651' => 'eca', 'EL10Ac1g01024' => 'bvu', 'EL10Ac8g19678' => 'bvu', 'EL10As5g23601' => 'bvu', 'EL10As5g23602' => 'bvu', 'Eucgr.B03983' => 'egr', 'Eucgr.D00297' => 'egr', 'Eucgr.F03208' => 'egr', 'Eucgr.K03561' => 'egr', 'FAN07G2004' => 'fan', 'FAN11G3035' => 'fan', 'FAN11G3311' => 'fan', 'FAN12G2975' => 'fan', 'FAN12G3342' => 'fan', 'FAN16G0566' => 'fan', 'FAN16G2587' => 'fan', 'FAN19G2578' => 'fan', 'FAN21G1160' => 'fan', 'FAN21G2950' => 'fan', 'FAN23G3066' => 'fan', 'FAN25G2613' => 'fan', 'FAN25G2858' => 'fan', 'FAN26G2572' => 'fan', 'FAN28G2241' => 'fan', 'FvH4_1g26760' => 'fve', 'FvH4_3g05530' => 'fve', 'FvH4_3g16760' => 'fve', 'FvH4_4g20730' => 'fve', 'Glyma.01G105200' => 'gma', 'Glyma.02G010100' => 'gma', 'Glyma.03G221600' => 'gma', 'Glyma.05G130600' => 'gma', 'Glyma.07G236100' => 'gma', 'Glyma.08G085400' => 'gma', 'Glyma.09G032200' => 'gma', 'Glyma.10G010700' => 'gma', 'Glyma.10G123000' => 'gma', 'Glyma.13G218200' => 'gma', 'Glyma.13G259400' => 'gma', 'Glyma.13G259500' => 'gma', 'Glyma.15G093900' => 'gma', 'Glyma.15G248401' => 'gma', 'Glyma.15G252100' => 'gma', 'Glyma.17G037300' => 'gma', 'Glyma.19G218700' => 'gma', 'Gohir.A01G035900' => 'ghi', 'Gohir.A01G041933' => 'ghi', 'Gohir.A06G075650' => 'ghi', 'Gohir.A06G137600' => 'ghi', 'Gohir.A06G196900' => 'ghi', 'Gohir.A07G129800' => 'ghi', 'Gohir.A08G040100' => 'ghi', 'Gohir.A09G077550' => 'ghi', 'Gohir.A09G241600' => 'ghi', 'Gohir.A10G040701' => 'ghi', 'Gohir.A10G040751' => 'ghi', 'Gohir.A12G123001' => 'ghi', 'Gohir.A13G152000' => 'ghi', 'Gohir.D01G023583' => 'ghi', 'Gohir.D01G029800' => 'ghi', 'Gohir.D06G142800' => 'ghi', 'Gohir.D06G204400' => 'ghi', 'Gohir.D07G134100' => 'ghi', 'Gohir.D08G050200' => 'ghi', 'Gohir.D09G077700' => 'ghi', 'Gohir.D09G242300' => 'ghi', 'Gohir.D10G041500' => 'ghi', 'Gohir.D12G126600' => 'ghi', 'Gohir.D13G156300' => 'ghi', 'Gorai.001G145700' => 'gra', 'Gorai.002G031700' => 'gra', 'Gorai.002G038900' => 'gra', 'Gorai.004G049800' => 'gra', 'Gorai.006G092800' => 'gra', 'Gorai.006G266000' => 'gra', 'Gorai.008G137500' => 'gra', 'Gorai.010G166600' => 'gra', 'Gorai.010G238400' => 'gra', 'Gorai.011G043800' => 'gra', 'Gorai.013G176900' => 'gra', 'GSVIVG01000687001' => 'vvi', 'GSVIVG01000689001' => 'vvi', 'GSVIVG01021468001' => 'vvi', 'GSVIVG01028169001' => 'vvi', 'GSVIVG01034945001' => 'vvi', 'HanXRQChr03g0077611' => 'han', 'HanXRQChr04g0112051' => 'han', 'HanXRQChr08g0235491' => 'han', 'HanXRQChr10g0284751' => 'han', 'HanXRQChr10g0305731' => 'han', 'HanXRQChr14g0426991' => 'han', 'HanXRQChr15g0466231' => 'han', 'HanXRQChr15g0492011' => 'han', 'Haze_00836' => 'cav', 'Haze_00839' => 'cav', 'Haze_00840' => 'cav', 'Haze_05084' => 'cav', 'Haze_05086' => 'cav', 'Haze_05602' => 'cav', 'Haze_08490' => 'cav', 'Hma1.2p1_0020F.1_g013915' => 'hma', 'Hma1.2p1_0280F.1_g112980' => 'hma', 'Hma1.2p1_0325F.1_g125920' => 'hma', 'Hma1.2p1_0965F.1_g242140' => 'hma', 'HPP92_002851' => 'vpl', 'HPP92_010600' => 'vpl', 'HPP92_010601' => 'vpl', 'HPP92_017016' => 'vpl', 'HPP92_017261' => 'vpl', 'HPP92_023435' => 'vpl', 'HPP92_027784' => 'vpl', 'HPP92_027785' => 'vpl', 'Hund02318' => 'sun', 'Hund09664' => 'sun', 'Hund10334' => 'sun', 'Hund21549' => 'sun', 'Lalb_Chr02g0146941' => 'lal', 'Lalb_Chr03g0031441' => 'lal', 'Lalb_Chr06g0167031' => 'lal', 'Lalb_Chr07g0181891' => 'lal', 'Lalb_Chr13g0298721' => 'lal', 'Lalb_Chr15g0086821' => 'lal', 'Lalb_Chr15g0089061' => 'lal', 'Lalb_Chr18g0055431' => 'lal', 'Lalb_Chr19g0133601' => 'lal', 'Lalb_Chr20g0108961' => 'lal', 'Lalb_Chr25g0285421' => 'lal', 'Lj1A1188T44' => 'lonja', 'Lj1A817G51' => 'lonja', 'Lj1g0011545' => 'lja', 'Lj2A305T54' => 'lonja', 'Lj2C1211T0' => 'lonja', 'Lj3C835T2' => 'lonja', 'Lj3g0012310' => 'lja', 'Lj3g0016320' => 'lja', 'Lj4g0004269' => 'lja', 'Lj4g0006719' => 'lja', 'Lj5g0005772' => 'lja', 'Lj6A695G24' => 'lonja', 'Lj6g0004474' => 'lja', 'Lj6g0023910' => 'lja', 'Lj8A142T62' => 'lonja', 'Lsat_1_v5_gn_1_40881' => 'lsa', 'Lsat_1_v5_gn_4_88341' => 'lsa', 'Lsat_1_v5_gn_5_125361' => 'lsa', 'Lsat_1_v5_gn_6_70180' => 'lsa', 'Lsat_1_v5_gn_6_70461' => 'lsa', 'Lsat_1_v5_gn_7_100961' => 'lsa', 'Lsat_1_v5_gn_7_28201' => 'lsa', 'Lsat_1_v5_gn_8_76581' => 'lsa', 'Lsat_1_v5_gn_9_101040' => 'lsa', 'Manes.01G231100' => 'mes', 'Manes.03G091000' => 'mes', 'Manes.03G208300' => 'mes', 'Manes.15G002900' => 'mes', 'Manes.15G101500' => 'mes', 'Manes.15G121600' => 'mes', 'Manes.17G070100' => 'mes', 'MBI07_g23224_MAGBIO' => 'mbi', 'MBI10_g30415_MAGBIO' => 'mbi', 'MBI13_g11337_MAGBIO' => 'mbi', 'MBI15_g26707_MAGBIO' => 'mbi', 'MBI19_g03287_MAGBIO' => 'mbi', 'MD05G1207000' => 'mdo', 'MD05G1283800' => 'mdo', 'MD09G1286800' => 'mdo', 'MD10G1194100' => 'mdo', 'MD10G1262000' => 'mdo', 'MD13G1148400' => 'mdo', 'MD16G1148400' => 'mdo', 'MD17G1279100' => 'mdo', 'Medtr1g086550' => 'mtr', 'Medtr2g019370' => 'mtr', 'Medtr2g033270' => 'mtr', 'Medtr2g070870' => 'mtr', 'Medtr3g015110' => 'mtr', 'Medtr4g096840' => 'mtr', 'Medtr4g123020' => 'mtr', 'Medtr8g461330' => 'mtr', 'MELO3C002735.2' => 'cme', 'MELO3C007132.2' => 'cme', 'MELO3C016152.2' => 'cme', 'MELO3C023635.2' => 'cme', 'MELO3C030787.2' => 'cme', 'Migut.D00053' => 'egut', 'Migut.G00026' => 'egut', 'Migut.H01362' => 'egut', 'Migut.H02079' => 'egut', 'Migut.M00597' => 'egut', 'Migut.M00902' => 'egut', 'Migut.M00908' => 'egut', 'Migut.M00909' => 'egut', 'MSTRG.13253' => 'ama', 'MSTRG.14278' => 'ama', 'MSTRG.14774' => 'ama', 'MSTRG.15014' => 'ama', 'MSTRG.21712' => 'ama', 'MSTRG.21756' => 'ama', 'MSTRG.6720' => 'ama', 'Nitab4.5_0000222g0140' => 'nta', 'Nitab4.5_0000420g0080' => 'nta', 'Nitab4.5_0000745g0230' => 'nta', 'Nitab4.5_0000869g0040' => 'nta', 'Nitab4.5_0000923g0050' => 'nta', 'Nitab4.5_0000992g0010' => 'nta', 'Nitab4.5_0001013g0080' => 'nta', 'Nitab4.5_0001481g0010' => 'nta', 'Nitab4.5_0001533g0010' => 'nta', 'Nitab4.5_0001662g0020' => 'nta', 'Nitab4.5_0001662g0030' => 'nta', 'Nitab4.5_0001814g0040' => 'nta', 'Nitab4.5_0002209g0240' => 'nta', 'Nitab4.5_0002495g0050' => 'nta', 'Nitab4.5_0003946g0020' => 'nta', 'Nitab4.5_0008288g0010' => 'nta', 'Nitab4.5_0011642g0020' => 'nta', 'Nitab4.5_0012276g0010' => 'nta', 'Nn3g20778' => 'nnu', 'Nn3g21813' => 'nnu', 'Nn4g25461' => 'nnu', 'Nn4g26575' => 'nnu', 'Oeu001304.1' => 'oeu', 'Oeu002216.1' => 'oeu', 'Oeu002217.1' => 'oeu', 'Oeu003746.1' => 'oeu', 'Oeu014223.1' => 'oeu', 'Oeu017129.1' => 'oeu', 'Oeu019502.1' => 'oeu', 'Oeu020016.1' => 'oeu', 'Oeu022723.2' => 'oeu', 'Oeu030926.1' => 'oeu', 'Oeu031272.1' => 'oeu', 'Oeu033619.1' => 'oeu', 'Oeu034149.1' => 'oeu', 'Oeu038050.1' => 'oeu', 'Oeu044741.1' => 'oeu', 'Oeu052367.1' => 'oeu', 'Oeu052369.1' => 'oeu', 'Oeu064064.1' => 'oeu', 'Os01g0209700' => 'osa', 'Os01g0332200' => 'osa', 'Os01g0757200' => 'osa', 'Os05g0158600' => 'osa', 'Os05g0208550' => 'osa', 'Os05g0514600' => 'osa', 'Os05g0560900' => 'osa', 'Peaxi162Scf00035g00149' => 'pax', 'Peaxi162Scf00111g00920' => 'pax', 'Peaxi162Scf00111g00922' => 'pax', 'Peaxi162Scf00111g00923' => 'pax', 'Peaxi162Scf00164g00091' => 'pax', 'Peaxi162Scf00228g00912' => 'pax', 'Peaxi162Scf00770g00028' => 'pax', 'Peaxi162Scf01211g00136' => 'pax', 'Peaxi162Scf01364g00001' => 'pax', 'PGR031G0572' => 'pgr', 'PGR031G0876' => 'pgr', 'PGR042G1993' => 'pgr', 'PGR044G2299' => 'pgr', 'PGR083G0294' => 'pgr', 'PGSC0003DMG400009021' => 'stu', 'PGSC0003DMG400013089' => 'stu', 'PGSC0003DMG400019037' => 'stu', 'PGSC0003DMG400021095' => 'stu', 'PGSC0003DMG400021292' => 'stu', 'PGSC0003DMG400027206' => 'stu', 'PGSC0003DMG400027631' => 'stu', 'PGSC0003DMG400027632' => 'stu', 'PGSC0003DMG400027645' => 'stu', 'Phvul.001G215000' => 'pvu', 'Phvul.002G193300' => 'pvu', 'Phvul.003G118300' => 'pvu', 'Phvul.005G061000' => 'pvu', 'Phvul.005G061200' => 'pvu', 'Phvul.006G120700' => 'pvu', 'Phvul.006G165000' => 'pvu', 'Phvul.007G212200' => 'pvu', 'Potri.001G378400' => 'ptr', 'Potri.002G191900' => 'ptr', 'Potri.004G065000' => 'ptr', 'Potri.008G101600' => 'ptr', 'Potri.010G149700' => 'ptr', 'Potri.011G095600' => 'ptr', 'Potri.014G117300' => 'ptr', 'Prupe.1G111900' => 'ppe', 'Prupe.1G536200' => 'ppe', 'Prupe.3G006700' => 'ppe', 'Prupe.4G080700' => 'ppe', 'Prupe.4G150200' => 'ppe', 'Psat0s1953g0280' => 'psa', 'Psat0s2469g0040' => 'psa', 'Psat1g001040' => 'psa', 'Psat1g189360' => 'psa', 'Psat4g173520' => 'psa', 'Psat6g160000' => 'psa', 'Psat7g089800' => 'psa', 'PSO210G6026' => 'pso', 'PSO339G1224' => 'pso', 'PSO541G3162' => 'pso', 'PSO761G0201' => 'pso', 'PSO781G0204' => 'pso', 'QL04p070209' => 'qlo', 'QL05p058025' => 'qlo', 'QL06p013209' => 'qlo', 'QL09p044729' => 'qlo', 'QL12p018742' => 'qlo', 'RcHm_v2.0_Chr3g0486971' => 'rch', 'RcHm_v2.0_Chr4g0426161' => 'rch', 'RcHm_v2.0_Chr5g0014211' => 'rch', 'RcHm_v2.0_Chr5g0027981' => 'rch', 'Rhsim01G0292500' => 'rsi', 'Rhsim04G0242800' => 'rsi', 'Rhsim06G0185300' => 'rsi', 'Rhsim13G0194900' => 'rsi', 'RhsimUnG0204600' => 'rsi', 'Sabra02G0163900' => 'sbr', 'Sabra04G0043300' => 'sbr', 'Sabra08G0076900' => 'sbr', 'Sabra10G0115300' => 'sbr', 'Sabra10G0115400' => 'sbr', 'Sabra14G0087000' => 'sbr', 'Sabra16G0249200' => 'sbr', 'SalBow3G3862' => 'sbo', 'SalBow7G2321' => 'sbo', 'SalBow7G3548' => 'sbo', 'SalBow8G0818' => 'sbo', 'SalBow8G2202' => 'sbo', 'SalBow8G2869' => 'sbo', 'Sc05g0000270' => 'sci', 'Sc05g0006180' => 'sci', 'Sc16g0003360' => 'sci', 'Sed0005697' => 'sed', 'Sed0020249' => 'sed', 'Sed0022219' => 'sed', 'Sed0024826' => 'sed', 'Sed0024882' => 'sed', 'Sed0026254' => 'sed', 'SGA_v2.0_scaffold106G30651' => 'sas', 'SGA_v2.0_scaffold157G37354' => 'sas', 'SGA_v2.0_scaffold181G39799' => 'sas', 'SGA_v2.0_scaffold1G00175' => 'sas', 'SGA_v2.0_scaffold22G09975' => 'sas', 'SGA_v2.0_scaffold4G02129' => 'sas', 'SGA_v2.0_scaffold73G24345' => 'sas', 'SGA_v2.0_scaffold80G25715' => 'sas', 'SHI00057' => 'shi', 'Solyc01g058030.2' => 'sly', 'Solyc01g058040.2' => 'sly', 'Solyc01g079200.4' => 'sly', 'Solyc02g070430.3' => 'sly', 'Solyc05g053340.4' => 'sly', 'Solyc07g056670.3' => 'sly', 'Solyc07g061720.3' => 'sly', 'Solyc07g061730.3' => 'sly', 'Solyc08g016660.2' => 'sly', 'Solyc10g007560.2' => 'sly', 'Solyc10g007570.4' => 'sly', 'Sopen01g023520' => 'spe', 'Sopen01g030980' => 'spe', 'Sopen02g019510' => 'spe', 'Sopen05g031850' => 'spe', 'Sopen07g030010' => 'spe', 'Sopen07g030070' => 'spe', 'Sopen07g030080' => 'spe', 'Sopen08g007060' => 'spe', 'Sopen10g003490' => 'spe', 'Sp1g01480' => 'spa', 'Sp1g25910' => 'spa', 'Sp1g34930' => 'spa', 'Sp4g16810' => 'spa', 'Sp5g33530' => 'spa', 'TAR362G0803' => 'tar', 'TAR365G1032' => 'tar', 'TAR513G0001' => 'tar', 'TAR624G1020' => 'tar', 'TAR626G1510' => 'tar', 'TAR627G0511' => 'tar', 'TAR633G2796' => 'tar', 'TAR636G1873' => 'tar', 'THA.LOC104814693' => 'tha', 'THA.LOC104820648' => 'tha', 'THA.LOC104821802' => 'tha', 'THA.LOC104825932' => 'tha', 'Thecc.01G319200' => 'tca', 'Thecc.04G306900' => 'tca', 'Thecc.06G150500' => 'tca', 'Thecc.07G146100' => 'tca', 'Thhalv10008120m.g' => 'esa', 'Thhalv10008179m.g' => 'esa', 'Thhalv10012193m.g' => 'esa', 'Thhalv10017806m.g' => 'esa', 'Thhalv10018871m.g' => 'esa', 'Thhalv10021102m.g' => 'esa', 'TPR.G12540' => 'tpr', 'TPR.G12601' => 'tpr', 'TPR.G15247' => 'tpr', 'TPR.G26613' => 'tpr', 'TPR.G26683' => 'tpr', 'TPR.G29335' => 'tpr', 'TPR.G29336' => 'tpr', 'TPR.G2941' => 'tpr', 'TPR.G31751' => 'tpr', 'TPR.G36145' => 'tpr', 'TPR.G36541' => 'tpr', 'TWI09G0990' => 'twi', 'TWI14G1336' => 'twi', 'TWI23G0669' => 'twi', 'TWI73G0192' => 'twi', 'TWI73G0714' => 'twi', 'unitig_26.g10108' => 'ugi', 'unitig_37.g12101' => 'ugi', 'unitig_37.g12846' => 'ugi', 'unitig_46.g18299' => 'ugi', 'unitig_749.g13712' => 'ugi', 'unitig_92.g28158' => 'ugi', 'vmacro03961' => 'vma', 'vmacro07972' => 'vma', 'vmacro09431' => 'vma', 'vmacro12010' => 'vma', 'vmacro15098' => 'vma', 'VMungo0251G0778' => 'vmu', 'VMungo0540G1430' => 'vmu', 'VMungo0540G1665' => 'vmu', 'VMungo0720G0536' => 'vmu', 'VMungo1080G0089' => 'vmu', 'VMungo1215G3082' => 'vmu', 'VMungo1383G0314' => 'vmu', 'VMungo1383G1246' => 'vmu', 'VMungo1383G1893' => 'vmu', 'Zm00001eb120250' => 'zma', 'Zm00001eb131180' => 'zma', 'Zm00001eb152710' => 'zma', 'Zm00001eb282550' => 'zma', 'Zm00001eb283860' => 'zma', 'Zm00001eb338340' => 'zma', 'Zm00001eb370660' => 'zma', 'Zm00001eb412670' => 'zma' ) $gf_id = 'HOM05D000858' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000858' ) $data_identifier = 'HOM05D000858' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 5, 'ach' => (int) 14, 'amhyb' => (int) 2, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 4, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 11, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 6, 'car' => (int) 9, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 4, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 12, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 17, 'ghi' => (int) 24, 'gra' => (int) 11, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 11, 'lonja' => (int) 7, 'lja' => (int) 8, 'lsa' => (int) 9, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 8, 'ama' => (int) 7, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 18, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 8, 'ptr' => (int) 7, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 3, 'sed' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 1, 'sly' => (int) 11, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 11, 'twi' => (int) 5, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb412670' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1